Jose would win standing. Easily. His muay Thai is just on a legendary level. Surely pacmans boxing is better but the gap between their muay Thai is MUCH bigger then the gap between their boxing. And one thing you failed to mention is how good his footwork/head movement is. Watch his fight with hominick.
The gap between their boxing is insanely large. It isn't even remotely close.
It comes down to if Aldo can chop Pacquiao down before he is finished.